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1. GSEApy GSEApy Public

   Gene Set Enrichment Analysis in Python

   Python 721 148

2. GNNHap GNNHap Public

   Graph neural network for prioritizing casual genes from Mouse GWAS

   Python 8 1

3. haplomap haplomap Public

   Haplotype-based computational genetic mapping (HBCGM) for inbred population

   C++ 7 1

4. velocyto-rs velocyto-rs Public

   rust version of velocyto.py, and beyond

   Rust 1 1

5. MuDataSeurat MuDataSeurat Public

   Forked from PMBio/MuDataSeurat

   .h5mu files interface for Seurat

   R 10 3

6. jupyter-mcp-live jupyter-mcp-live Public

   MCP server built into Jupyter Server: AI agents edit and run the notebooks open in JupyterLab, with outputs streaming into cells live.

   Python