Issues

• Regenerating .hic and .assembly files after decontamination

  wangyibin/CPhasing#62 · Filter by author jbarinez opened on Oct 8, 2026
  1

• Pipeline and parameters for allotetraploid

  wangyibin/CPhasing#60 · Filter by author jianghao0799 opened on Aug 27, 2026
  2

• Add a Bioconda recipe

  wangyibin/CPhasing#59 · Filter by author prototaxites opened on Aug 25, 2026
  1

• The CPhasing results conflict with the verkko assembly

  wangyibin/CPhasing#58 · Filter by author zhouxp9709 opened on Jul 28, 2026
  1

• The wrong depth when identifying the collapsed contigs

  wangyibin/CPhasing#54 · Filter by author fuxiangxin0703 opened on Jul 3, 2026
  1

• It gets stuck while running step 0.3 hcr

  wangyibin/CPhasing#53 · Filter by author wjq1981 opened on Jun 14, 2026
  2

• Failed to create index

  wangyibin/CPhasing#52 · Filter by author wu123tj opened on Jun 8, 2026
  1

• extracting pruned bam file

  wangyibin/CPhasing#51 · Filter by author aleksandrabliznina opened on Jun 1, 2026
  2

• Methalign

  wangyibin/CPhasing#50 · Filter by author jbarinez opened on May 27, 2026
  1

• Large hyperpartition groups missing from groups.agp after scaffolding (polyploid CiFi dataset)

  wangyibin/CPhasing#49 · Filter by author DR-Omics opened on May 21, 2026
  6

• Phasing diploid assembly with sex chromosomes

  wangyibin/CPhasing#48 · Filter by author sheinasim-USDA opened on Apr 28, 2026
  1

• Cphasing plot signal loss

  wangyibin/CPhasing#47 · Filter by author Micranthes opened on Mar 5, 2026
  2

• 类似于poreC的国产数据

  wangyibin/CPhasing#46 · Filter by author zhidaobuzhidao opened on Mar 5, 2026
  1

• haploid报错：TypeError: 'NoneType' object is not subscriptable

  wangyibin/CPhasing#45 · Filter by author Kmanjor opened on Feb 23, 2026
  2

• CPhasing runs successfully but .hg file is missing after hyperpartition

  wangyibin/CPhasing#44 · Filter by author yt619 opened on Jan 10, 2026
  5

• Short-read Hi-C combined with CiFi

  wangyibin/CPhasing#43 · Filter by author dabitz opened on Jan 8, 2026
  1

• expected output type 'Null', got 'Int64'; set return_dtype to the proper datatype

  wangyibin/CPhasing#40 · Filter by author xychen233 opened on Oct 13, 2025
  3

• 关于Collapse的表现问题

  wangyibin/CPhasing#39 · Filter by author majssssa opened on Sep 18, 2025
  12

• How can I recover sequences from collapsed homologous regions?

  wangyibin/CPhasing#38 · Filter by author Axolotl233 opened on Sep 12, 2025
  2

• hic plot about KR normalization

  wangyibin/CPhasing#37 · Filter by author linyuiz opened on Sep 10, 2025

• How does CPhasing use proximity ligation paths with PoreC and HiFi-C data

  wangyibin/CPhasing#36 · Filter by author ScottGeib-USDA opened on Sep 4, 2025
  1

• About HIC Plot

  wangyibin/CPhasing#35 · Filter by author linyuiz opened on Sep 4, 2025
  1

• Regarding HIC signal loss

  wangyibin/CPhasing#34 · Filter by author linyuiz opened on Sep 3, 2025
  4

• About plot.bedtools.log

  wangyibin/CPhasing#33 · Filter by author linyuiz opened on Sep 2, 2025
  1

• cphasing-rs pairs-break

  wangyibin/CPhasing#32 · Filter by author Porsche97 opened on Sep 2, 2025
  4