[AdishAssain]

Bumps the version to 0.1.1 across packaging metadata, the lockfile, and the
fallback version strings used when the package is not installed.

The published 0.1.0 release predates the fix that keeps every factor of a
coupled infection rate expression, so it computes those flows with factors
dropped. This release carries that fix.

Citation metadata moves to 0.1.1. The DOI fields hold the concept DOI, which
resolves to the newest archive, because Zenodo mints a version DOI only after
the release is published. Both are updated to the 0.1.1 version DOI once it
exists.

The release count is dropped from the paper so the sentence stays accurate
across future releases.

Verification: ruff clean, 183 tests pass, CITATION.cff valid per CFF schema
1.2.0, paper.md 1705 words.

Summary by CodeRabbit

• Release

  • Updated the package to version 0.1.1.
  • Updated displayed version information and release dates across project metadata.

• Documentation

  • Added the 0.1.1 changelog entry.
  • Updated citation and publication metadata for version 0.1.1.
  • Updated the research impact statement to reflect three tagged releases.

[coderabbitai]

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Advanced

Run ID: 397099bc-e806-47ce-a8d5-3acbc6b17815

📥 Commits

Reviewing files that changed from the base of the PR and between 7f8ed01 and f9f3fac.

⛔ Files ignored due to path filters (1)

• uv.lock is excluded by !**/*.lock

📒 Files selected for processing (7)

• CHANGELOG.md
• CITATION.cff
• paper.bib
• paper.md
• pyproject.toml
• src/patchsim/__init__.py
• src/patchsim/calibration.py

Included review availability: Your plan provides up to 1 included review per hour; 0 remain after this review.

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📝 Walkthrough

Walkthrough

The project version changed to 0.1.1. Runtime fallback values, changelog data, citation metadata, DOI references, and the reported PyPI release count were updated to match the release.

Changes

Release 0.1.1 version and metadata

Layer / File(s)	Summary
Package version alignment pyproject.toml, src/patchsim/__init__.py, src/patchsim/calibration.py	The declared project version and runtime fallback values changed from 0.1.0 to 0.1.1.
Release records CHANGELOG.md, CITATION.cff, paper.bib, paper.md	Release 0.1.1 was added to the changelog. Citation metadata and DOI references were updated. The research statement now reports three tagged PyPI releases.

Priority: ⬇️ Low

Estimated code review effort: 1 (Trivial) | ~5 minutes

Change: Other

Merge Risk: ⚪ Minimal · up to f9f3f

The release metadata is internally consistent and no merge-blocking risk is established.

🚥 Pre-merge checks | ✅ 4 | ❌ 1

❌ Failed checks (1 warning)

Check name	Status	Explanation	Resolution
Docstring Coverage	⚠️ Warning	Docstring coverage is 0.00% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 1 functions across 2 files. (5 skipped: 5 …	Write docstrings for the functions missing them to satisfy the coverage threshold.

✅ Passed checks (4 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and concisely describes the main change: preparing the project for the v0.1.1 release. This matches the version, citation, packaging, and documentation updates.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

Full details: Docstring Coverage

Explanation

Docstring coverage is 0.00% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 1 functions across 2 files. (5 skipped: 5 unsupported.)

• Fix all pre-merge checks with AI

✨ Finishing Touches 💡 1

📝 Generate docstrings 💡

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch chore/release-0.1.1

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