Issues

• Release request: OpenMS SILAC label fix (6de11d3) is not in the latest PyPI release 0.1.6

  bigbio/sdrf-pipelines#358 · Filter by author timosachsenberg opened on Oct 17, 2026

• Combined templates reject valid SILAC rows with shared source/assay and different labels

  bigbio/sdrf-pipelines#354 · Filter by author timosachsenberg opened on Oct 7, 2026

• Validator ignores allow_pooled / allow_anonymized: 'pooled' and 'anonymized' rejected on characteristics[age] and characteristics[sex] despite being the template's own examples

  bigbio/sdrf-pipelines#346 · Filter by author timosachsenberg opened on Aug 30, 2026

• Bundled sdrf-templates drift from proteomics-sample-metadata under the same version string (dia-acquisition 1.1.0 rejects the recommended NT+AC acquisition method)

  bigbio/sdrf-pipelines#345 · Filter by author timosachsenberg opened on Aug 30, 2026

• convert-openms fails on multiplexed SDRF when comment[label] uses CV terms

  bigbio/sdrf-pipelines#344 · Filter by author trishorts opened on Aug 28, 2026
  1

• Metaproteomics exclusions are ignored when combining templates

  bigbio/sdrf-pipelines#333 · Filter by author nithujohn opened on Aug 6, 2026
  

• Add convert-relink converter for XL-MS SDRF files

  bigbio/sdrf-pipelines#283 · Filter by author ypriverol opened on Apr 6, 2026

• We have cache ontologies for the main ontologies but others are mentioned and not cached

  enhancement
  bigbio/sdrf-pipelines#271 · Filter by author ypriverol opened on Feb 26, 2026
  

• OpenMS converter should not fail on non-unimod modifications

  low-priority
  bigbio/sdrf-pipelines#258 · Filter by author jpfeuffer opened on Feb 2, 2026

• existing PRIDE ontology term is not found

  bigbio/sdrf-pipelines#245 · Filter by author Cajac102 opened on Jan 6, 2026
  

• SDRF validation and mass tolerance

  bigbio/sdrf-pipelines#239 · Filter by author asierlarrea opened on Oct 17, 2025
  1

• Adding method for guessing closest schema beyond minimum for validation

  bigbio/sdrf-pipelines#238 · Filter by author noatgnu opened on Sep 9, 2025
  1

• Add utility method for reordering sdrf file column according to one or multiple schemas

  enhancement
  bigbio/sdrf-pipelines#232 · Filter by author noatgnu opened on May 21, 2025

• Add missing dependencies for development and testing with poetry

  bigbio/sdrf-pipelines#214 · Filter by author fabianegli opened on May 8, 2025 · Next release

• Versioning scheme

  bigbio/sdrf-pipelines#213 · Filter by author fabianegli opened on May 8, 2025 · Next release

• Add optional MS-based column comment["quantitation level"] for different TMT designs?

  bigbio/sdrf-pipelines#184 · Filter by author jpfeuffer opened on Nov 5, 2024
  1