Issues

• Explicit hydrogens that the residue template doesn't have get no bonds

  alanhala/prote#12 · Filter by author alanhala opened on Nov 12, 2026

• Infer orders for covalent links the condensation rule can't handle

  alanhala/prote#10 · Filter by author alanhala opened on Nov 4, 2026

• CIF parser types values before the field is known, so comp_id 010 becomes 10

  alanhala/prote#9 · Filter by author alanhala opened on Nov 3, 2026

• Interactions

  alanhala/prote#8 · Filter by author alanhala opened on Oct 30, 2026

• Load chemical components from the CCD

  alanhala/prote#7 · Filter by author alanhala opened on Oct 30, 2026

• Add formal charges

  alanhala/prote#6 · Filter by author alanhala opened on Oct 30, 2026

• Hybridization from topology

  alanhala/prote#5 · Filter by author alanhala opened on Oct 30, 2026

• Find rings from bond graph

  alanhala/prote#4 · Filter by author alanhala opened on Oct 30, 2026

• Return missings when creating the bond graph

  alanhala/prote#3 · Filter by author alanhala opened on Oct 30, 2026